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capn3a calpain 3a, (p94) [ Onychostoma macrolepis ]

Gene ID: 131522870, updated on 28-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Locus tag
G5714_017261
Gene type
protein coding
RefSeq status
MODEL
Organism
Onychostoma macrolepis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Acrossocheilinae; Onychostoma
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_08 current ASM1243209v1 (GCF_012432095.1) 17 NC_081171.1 (23262521..23278953, complement)

Chromosome 17 - NC_081171.1Genomic Context describing neighboring genes Neighboring gene proton activated chloride channel 1 Neighboring gene zinc finger protein 106a Neighboring gene glucosidase, alpha; neutral C Neighboring gene tau tubulin kinase 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_081171.1 Chromosome 17 Reference ASM1243209v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_012432095.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1243209v1 Primary Assembly

Genomic

  1. NC_081171.1 Reference ASM1243209v1 Primary Assembly

    Range
    23262521..23278953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058748709.1 → XP_058604692.1  calpain-3 isoform X2

    UniProtKB/TrEMBL
    A0A7J6C5Y6

  2. XM_058748708.1 → XP_058604691.1  calpain-3 isoform X1

  3. XM_058748710.1 → XP_058604693.1  calpain-3 isoform X3

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases