U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

tsku tsukushi small leucine rich proteoglycan homolog (Xenopus laevis) [ Solea solea (common sole) ]

Gene ID: 131463033, updated on 28-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
tsku
Gene description
tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)
See related
EnsemblRapid:ENSXQHG00000008064
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea solea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See tsku in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_08 current fSolSol10.1 (GCF_958295425.1) 7 NC_081140.1 (9311752..9320314)

Chromosome 7 - NC_081140.1Genomic Context describing neighboring genes Neighboring gene serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b Neighboring gene guanylate cyclase 2F, retinal Neighboring gene matrix metallopeptidase 13b Neighboring gene matrix metalloproteinase-20-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_081140.1 Chromosome 7 Reference fSolSol10.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Exploring the larval transcriptome of the common sole (Solea solea L.). Ferraresso S, et al. BMC Genomics, 2013 May 10. PMID 23663263, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tsukushi

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_958295425.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSolSol10.1

Genomic

  1. NC_081140.1 Reference fSolSol10.1

    Range
    9311752..9320314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058634671.1 → XP_058490654.1  tsukushi isoform X2

  2. XM_058634673.1 → XP_058490656.1  tsukushi isoform X2

  3. XM_058634670.1 → XP_058490653.1  tsukushi isoform X1

    Related
    ENSXQHP00000017594.1, ENSXQHT00000017791.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.