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LOC131388781 STARR-seq mESC enhancer starr_41227 [ Mus musculus (house mouse) ]

Gene ID: 131388781, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131388781
Gene description
STARR-seq mESC enhancer starr_41227
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131388781 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (72484453..72486093)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene roundabout guidance receptor 1 Neighboring gene RIKEN cDNA 8030451O07 gene Neighboring gene STARR-seq mESC enhancer starr_41224 Neighboring gene STARR-seq mESC enhancer starr_41225 Neighboring gene STARR-seq mESC enhancer starr_41226 Neighboring gene predicted gene, 29908 Neighboring gene STARR-seq mESC enhancer starr_41230 Neighboring gene STARR-seq mESC enhancer starr_41231 Neighboring gene predicted gene, 52248 Neighboring gene STARR-seq mESC enhancer starr_41232 Neighboring gene STARR-seq mESC enhancer starr_41233 Neighboring gene STARR-seq mESC enhancer starr_41234 Neighboring gene RIKEN cDNA 4930500H12 gene Neighboring gene STARR-seq mESC enhancer starr_41237 Neighboring gene STARR-seq mESC enhancer starr_41239

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_224671.1 

    Range
    101..1741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    72484453..72486093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version