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LOC131388170 STARR-seq mESC enhancer starr_40124 [ Mus musculus (house mouse) ]

Gene ID: 131388170, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131388170
Gene description
STARR-seq mESC enhancer starr_40124
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C2 class enhancer that does not overlap an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131388170 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (12656619..12658104)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40118 Neighboring gene predicted gene, 38619 Neighboring gene STARR-seq mESC enhancer starr_40119 Neighboring gene RIKEN cDNA 4930414F18 gene Neighboring gene predicted gene, 57486 Neighboring gene STARR-seq mESC enhancer starr_40120 Neighboring gene STARR-seq mESC enhancer starr_40121 Neighboring gene STARR-seq mESC enhancer starr_40122 Neighboring gene RIKEN cDNA 1700003L19 gene Neighboring gene STARR-seq mESC enhancer starr_40123 Neighboring gene STARR-seq mESC enhancer starr_40126 Neighboring gene STARR-seq mESC enhancer starr_40128 Neighboring gene ZW10 interactor pseudogene Neighboring gene STARR-seq mESC enhancer starr_40129 Neighboring gene STARR-seq mESC enhancer starr_40130 Neighboring gene STARR-seq mESC enhancer starr_40131 Neighboring gene STARR-seq mESC enhancer starr_40134 Neighboring gene STARR-positive B cell enhancer mm9_chr16:13109553-13109853 Neighboring gene STARR-seq mESC enhancer starr_40135 Neighboring gene excision repair cross-complementing rodent repair deficiency, complementation group 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_224060.1 

    Range
    101..1586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    12656619..12658104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version