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LOC131330041 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [ Rhododendron vialii ]

Gene ID: 131330041, updated on 26-Oct-2023

Summary

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Gene symbol
LOC131330041
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhododendron vialii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Ericaceae; Ericoideae; Rhodoreae; Rhododendron
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Genomic context

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See LOC131330041 in Genome Data Viewer
Location:
chromosome: 6a
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_07 current ASM3025357v1 (GCF_030253575.1) 6a NC_080562.1 (28135053..28141992)

Chromosome 6a - NC_080562.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein 4-like Neighboring gene EIN3-binding F-box protein 2-like Neighboring gene pentatricopeptide repeat-containing protein At2g41080-like Neighboring gene uncharacterized LOC131330100

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080562.1 Chromosome 6a Reference ASM3025357v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030253575.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3025357v1

Genomic

  1. NC_080562.1 Reference ASM3025357v1

    Range
    28135053..28141992
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058363516.1 → XP_058219499.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

  2. XM_058363515.1 → XP_058219498.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases