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LOC131319812 soluble starch synthase 1, chloroplastic/amyloplastic [ Rhododendron vialii ]

Gene ID: 131319812, updated on 18-Sep-2024

Summary

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Gene symbol
LOC131319812
Gene description
soluble starch synthase 1, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhododendron vialii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Ericaceae; Ericoideae; Rhodoreae; Rhododendron
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Genomic context

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See LOC131319812 in Genome Data Viewer
Location:
chromosome: 3a
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_07 current ASM3025357v1 (GCF_030253575.1) 3a NC_080559.1 (30315800..30332469)

Chromosome 3a - NC_080559.1Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 Neighboring gene uncharacterized LOC131319811 Neighboring gene uncharacterized LOC131319813 Neighboring gene 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like Neighboring gene uncharacterized LOC131319820 Neighboring gene uncharacterized LOC131319818

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080559.1 Chromosome 3a Reference ASM3025357v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030253575.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3025357v1

Genomic

  1. NC_080559.1 Reference ASM3025357v1

    Range
    30315800..30332469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058350218.1 → XP_058206201.1  soluble starch synthase 1, chloroplastic/amyloplastic

Nucleotide Protein
Heading Accession and Version

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