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LOC131313250 hydroxyproline O-galactosyltransferase GALT2 [ Rhododendron vialii ]

Gene ID: 131313250, updated on 26-Oct-2023

Summary

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Gene symbol
LOC131313250
Gene description
hydroxyproline O-galactosyltransferase GALT2
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhododendron vialii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Ericaceae; Ericoideae; Rhodoreae; Rhododendron
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Genomic context

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See LOC131313250 in Genome Data Viewer
Location:
chromosome: 13a
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_07 current ASM3025357v1 (GCF_030253575.1) 13a NC_080569.1 (14428057..14435662)

Chromosome 13a - NC_080569.1Genomic Context describing neighboring genes Neighboring gene auxin response factor 6 Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic Neighboring gene phospholipase A1-Igamma1, chloroplastic Neighboring gene tyrosine decarboxylase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080569.1 Chromosome 13a Reference ASM3025357v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030253575.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3025357v1

Genomic

  1. NC_080569.1 Reference ASM3025357v1

    Range
    14428057..14435662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058341460.1 → XP_058197443.1  hydroxyproline O-galactosyltransferase GALT2

  2. XM_058341461.1 → XP_058197444.1  hydroxyproline O-galactosyltransferase GALT2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases