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LOC131312026 probable beta-1,4-xylosyltransferase IRX10L [ Rhododendron vialii ]

Gene ID: 131312026, updated on 26-Oct-2023

Summary

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Gene symbol
LOC131312026
Gene description
probable beta-1,4-xylosyltransferase IRX10L
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhododendron vialii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Ericaceae; Ericoideae; Rhodoreae; Rhododendron
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Genomic context

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See LOC131312026 in Genome Data Viewer
Location:
chromosome: 12a
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_07 current ASM3025357v1 (GCF_030253575.1) 12a NC_080568.1 (31122303..31192462)

Chromosome 12a - NC_080568.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF115-like Neighboring gene glycine--tRNA ligase, mitochondrial 1-like Neighboring gene chromophore lyase CRL, chloroplastic-like Neighboring gene uncharacterized protein At4g14100-like Neighboring gene succinate dehydrogenase assembly factor 2, mitochondrial-like Neighboring gene ATP synthase subunit alpha, mitochondrial-like Neighboring gene uncharacterized LOC131312033 Neighboring gene uncharacterized LOC131312027 Neighboring gene sucrose nonfermenting 4-like protein Neighboring gene uncharacterized LOC131312031 Neighboring gene calnexin homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080568.1 Chromosome 12a Reference ASM3025357v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-beta-D-xylan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucuronoxylan glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030253575.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3025357v1

Genomic

  1. NC_080568.1 Reference ASM3025357v1

    Range
    31122303..31192462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058339726.1 → XP_058195709.1  probable beta-1,4-xylosyltransferase IRX10L

  2. XM_058339727.1 → XP_058195710.1  probable beta-1,4-xylosyltransferase IRX10L

RNA

  1. XR_009195687.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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