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LOC131307831 cellulose synthase-like protein D4 [ Rhododendron vialii ]

Gene ID: 131307831, updated on 26-Oct-2023

Summary

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Gene symbol
LOC131307831
Gene description
cellulose synthase-like protein D4
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhododendron vialii
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Ericaceae; Ericoideae; Rhodoreae; Rhododendron
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Genomic context

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See LOC131307831 in Genome Data Viewer
Location:
chromosome: 11a
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_07 current ASM3025357v1 (GCF_030253575.1) 11a NC_080567.1 (39374492..39380074)

Chromosome 11a - NC_080567.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC131307840 Neighboring gene 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like Neighboring gene AT-rich interactive domain-containing protein 6-like Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene protein FAR1-RELATED SEQUENCE 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080567.1 Chromosome 11a Reference ASM3025357v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030253575.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3025357v1

Genomic

  1. NC_080567.1 Reference ASM3025357v1

    Range
    39374492..39380074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058334535.1 → XP_058190518.1  cellulose synthase-like protein D4

RNA

  1. XR_009194237.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases