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LOC131296555 STARR-seq mESC enhancer starr_02683 [ Mus musculus (house mouse) ]

Gene ID: 131296555, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131296555
Gene description
STARR-seq mESC enhancer starr_02683
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131296555 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (153195839..153197774)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene laminin, gamma 2 Neighboring gene ribosomal protein L5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_02673 Neighboring gene STARR-seq mESC enhancer starr_02677 Neighboring gene laminin, gamma 1 Neighboring gene STARR-seq mESC enhancer starr_02679 Neighboring gene STARR-positive B cell enhancer mm9_chr1:155135069-155135369 Neighboring gene STARR-positive B cell enhancer ABC_E5820 Neighboring gene STARR-positive B cell enhancer ABC_E2568 Neighboring gene predicted pseudogene 8818 Neighboring gene STARR-seq mESC enhancer starr_02688 Neighboring gene STARR-seq mESC enhancer starr_02689 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:155227105-155227297 Neighboring gene predicted gene, 46246 Neighboring gene Riken cDNA E330020D12 gene Neighboring gene STARR-positive B cell enhancer ABC_E5821

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_204967.1 

    Range
    101..2036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    153195839..153197774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version