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LOC131295522 STARR-seq mESC enhancer starr_00836 [ Mus musculus (house mouse) ]

Gene ID: 131295522, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131295522
Gene description
STARR-seq mESC enhancer starr_00836
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131295522 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (46960351..46961808)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene heat shock protein 8 pseudogene Neighboring gene dynein, axonemal, heavy chain 7C Neighboring gene STARR-seq mESC enhancer starr_00829 Neighboring gene STARR-seq mESC enhancer starr_00830 Neighboring gene STARR-positive B cell enhancer mm9_chr1:46910239-46910540 Neighboring gene STARR-positive B cell enhancer mm9_chr1:46910886-46911186 Neighboring gene solute carrier family 39 (zinc transporter), member 10 Neighboring gene STARR-seq mESC enhancer starr_00838 Neighboring gene STARR-seq mESC enhancer starr_00839 Neighboring gene STARR-seq mESC enhancer starr_00842 Neighboring gene STARR-seq mESC enhancer starr_00843 Neighboring gene STARR-seq mESC enhancer starr_00844 Neighboring gene STARR-seq mESC enhancer starr_00845 Neighboring gene predicted gene, 39638 Neighboring gene STARR-seq mESC enhancer starr_00846 Neighboring gene DnaJ (Hsp40) homolog, subfamily B, member 6 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_203942.1 

    Range
    101..1558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    46960351..46961808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version