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LOC131295332 STARR-seq mESC enhancer starr_00488 [ Mus musculus (house mouse) ]

Gene ID: 131295332, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131295332
Gene description
STARR-seq mESC enhancer starr_00488
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C2 class enhancer that does not overlap an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (28433347..28435895)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene 5524 Neighboring gene NOP2 nucleolar protein homolog pseudogene Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene Neighboring gene STARR-seq mESC enhancer starr_00485 Neighboring gene STARR-seq mESC enhancer starr_00486 Neighboring gene STARR-seq mESC enhancer starr_00487 Neighboring gene STARR-seq mESC enhancer starr_00489 Neighboring gene STARR-seq mESC enhancer starr_00490 Neighboring gene STARR-seq mESC enhancer starr_00491 Neighboring gene predicted gene 7846 Neighboring gene STARR-seq mESC enhancer starr_00492 Neighboring gene STARR-seq mESC enhancer starr_00493 Neighboring gene spermatogenesis associated 31 subfamily E member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_203752.1 

    Range
    101..2649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    28433347..28435895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version