U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC131240777 carboxyl-terminal-processing peptidase 1, chloroplastic [ Magnolia sinica ]

Gene ID: 131240777, updated on 2-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC131240777
Gene description
carboxyl-terminal-processing peptidase 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Magnolia sinica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Magnoliidae; Magnoliales; Magnoliaceae; Magnolia
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC131240777 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_07 current MsV1 (GCF_029962835.1) 3 NC_080575.1 (113326878..113348291, complement)

Chromosome 3 - NC_080575.1Genomic Context describing neighboring genes Neighboring gene GBF-interacting protein 1-like Neighboring gene AT-hook motif nuclear-localized protein 16 Neighboring gene succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like Neighboring gene cold shock protein 2-like Neighboring gene probable starch synthase 4, chloroplastic/amyloplastic

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_080575.1 Chromosome 3 Reference MsV1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
carboxyl-terminal-processing peptidase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029962835.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MsV1

Genomic

  1. NC_080575.1 Reference MsV1

    Range
    113326878..113348291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058239235.1 → XP_058095218.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X3

  2. XM_058239236.1 → XP_058095219.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X4

  3. XM_058239234.1 → XP_058095217.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2

  4. XM_058239232.1 → XP_058095215.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X1

  5. XM_058239237.1 → XP_058095220.1  carboxyl-terminal-processing peptidase 1, chloroplastic isoform X5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases