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LOC131190217 TNF receptor-associated factor 1-like [ Ahaetulla prasina ]

Gene ID: 131190217, updated on 2-Nov-2023

Summary

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Gene symbol
LOC131190217
Gene description
TNF receptor-associated factor 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ahaetulla prasina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Ahaetuliinae; Ahaetulla
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Genomic context

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See LOC131190217 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_07 current ASM2864084v1 (GCF_028640845.1) 2 NC_080540.1 (16088221..16112674)

Chromosome 2 - NC_080540.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC131192605 Neighboring gene uncharacterized LOC131192604 Neighboring gene DDAH family member 2, ADMA-independent Neighboring gene chloride intracellular channel 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080540.1 Chromosome 2 Reference ASM2864084v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028640845.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2864084v1

Genomic

  1. NC_080540.1 Reference ASM2864084v1

    Range
    16088221..16112674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058167367.1 → XP_058023350.1  TNF receptor-associated factor 1-like

Nucleotide Protein
Heading Accession and Version

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