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LOC130820637 carboxyl-terminal-processing peptidase 3, chloroplastic [ Amaranthus tricolor ]

Gene ID: 130820637, updated on 2-Nov-2023

Summary

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Gene symbol
LOC130820637
Gene description
carboxyl-terminal-processing peptidase 3, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Amaranthus tricolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Genomic context

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See LOC130820637 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM2621246v1 (GCF_026212465.1) 1 NC_080047.1 (41339941..41345710, complement)

Chromosome 1 - NC_080047.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase Nek6-like Neighboring gene laccase-17-like Neighboring gene target of rapamycin complex subunit LST8-like Neighboring gene auxin efflux carrier component 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080047.1 Chromosome 1 Reference ASM2621246v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carboxyl-terminal-processing peptidase 3, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026212465.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2621246v1 Primary Assembly

Genomic

  1. NC_080047.1 Reference ASM2621246v1 Primary Assembly

    Range
    41339941..41345710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057686099.1 → XP_057542082.1  carboxyl-terminal-processing peptidase 3, chloroplastic isoform X2

  2. XM_057686092.1 → XP_057542075.1  carboxyl-terminal-processing peptidase 3, chloroplastic isoform X1

Nucleotide Protein
Heading Accession and Version

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