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LOC130804328 serine hydroxymethyltransferase 3, chloroplastic [ Amaranthus tricolor ]

Gene ID: 130804328, updated on 2-Nov-2023

Summary

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Gene symbol
LOC130804328
Gene description
serine hydroxymethyltransferase 3, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Amaranthus tricolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Genomic context

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See LOC130804328 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM2621246v1 (GCF_026212465.1) 17 NC_080063.1 (14428597..14433485, complement)

Chromosome 17 - NC_080063.1Genomic Context describing neighboring genes Neighboring gene thioredoxin H9-like Neighboring gene thioredoxin-like protein HCF164, chloroplastic Neighboring gene probable protein phosphatase 2C 12 Neighboring gene probable protein phosphatase 2C 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080063.1 Chromosome 17 Reference ASM2621246v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cobalt ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycine hydroxymethyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-serine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in folic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycine biosynthetic process from serine IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tetrahydrofolate interconversion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine hydroxymethyltransferase 3, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026212465.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2621246v1 Primary Assembly

Genomic

  1. NC_080063.1 Reference ASM2621246v1 Primary Assembly

    Range
    14428597..14433485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057668723.1 → XP_057524706.1  serine hydroxymethyltransferase 3, chloroplastic

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases