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LOC130647370 aspartyl/asparaginyl beta-hydroxylase-like [ Hydractinia symbiolongicarpus ]

Gene ID: 130647370, updated on 9-Nov-2023

Summary

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Gene symbol
LOC130647370
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
EnsemblRapid:LOC130647370
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydractinia symbiolongicarpus
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Filifera; Hydractiniidae; Hydractinia
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Genomic context

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See LOC130647370 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_06 current HSymV2.1 (GCF_029227915.1) 6 NC_079880.1 (19273438..19279800, complement)

Chromosome 6 - NC_079880.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130647371 Neighboring gene protein phtf-like Neighboring gene double-strand-break repair protein rad21 homolog Neighboring gene uncharacterized LOC130647377

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079880.1 Chromosome 6 Reference HSymV2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029227915.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSymV2.1

Genomic

  1. NC_079880.1 Reference HSymV2.1

    Range
    19273438..19279800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057453207.1 → XP_057309190.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

    Related
    XP_057309190.1, XM_057453207.1

  2. XM_057453208.1 → XP_057309191.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

    Related
    XP_057309191.1, XM_057453208.1

  3. XM_057453209.1 → XP_057309192.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    Related
    XP_057309192.1, XM_057453209.1
Nucleotide Protein Strain
Heading Accession and Version

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