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LOC130645338 epsilon-sarcoglycan-like [ Hydractinia symbiolongicarpus ]

Gene ID: 130645338, updated on 9-Nov-2023

Summary

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Gene symbol
LOC130645338
Gene description
epsilon-sarcoglycan-like
See related
EnsemblRapid:LOC130645338
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydractinia symbiolongicarpus
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Filifera; Hydractiniidae; Hydractinia
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Genomic context

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See LOC130645338 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_06 current HSymV2.1 (GCF_029227915.1) 5 NC_079879.1 (21649420..21651379, complement)

Chromosome 5 - NC_079879.1Genomic Context describing neighboring genes Neighboring gene activating signal cointegrator 1 complex subunit 3-like Neighboring gene 28S ribosomal protein S6, mitochondrial-like Neighboring gene coiled-coil domain-containing protein 186-like Neighboring gene SH3 domain-binding glutamic acid-rich-like protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079879.1 Chromosome 5 Reference HSymV2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epsilon-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029227915.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSymV2.1

Genomic

  1. NC_079879.1 Reference HSymV2.1

    Range
    21649420..21651379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057451305.1 → XP_057307288.1  epsilon-sarcoglycan-like

    Related
    XP_057307288.1, XM_057451305.1
Nucleotide Protein Strain
Heading Accession and Version

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