U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC130636380 E3 ubiquitin-protein ligase CBL-like [ Hydractinia symbiolongicarpus ]

Gene ID: 130636380, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC130636380
Gene description
E3 ubiquitin-protein ligase CBL-like
See related
EnsemblRapid:LOC130636380
Gene type
protein coding
RefSeq status
MODEL
Organism
Hydractinia symbiolongicarpus
Lineage
Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Filifera; Hydractiniidae; Hydractinia
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC130636380 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_06 current HSymV2.1 (GCF_029227915.1) 3 NC_079877.1 (24368066..24380187, complement)

Chromosome 3 - NC_079877.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130636378 Neighboring gene uncharacterized LOC130636377 Neighboring gene tachykinin-like peptides receptor 86C Neighboring gene long-chain fatty acid transport protein 1-like Neighboring gene myosin-VIIa-like Neighboring gene E3 ubiquitin-protein ligase RNF13-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_079877.1 Chromosome 3 Reference HSymV2.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Differential gene expression between functionally specialized polyps of the colonial hydrozoan Hydractinia symbiolongicarpus (Phylum Cnidaria). Sanders SM, et al. BMC Genomics, 2014 May 28. PMID 24884766, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphotyrosine residue binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of epidermal growth factor-activated receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase CBL-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029227915.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HSymV2.1

Genomic

  1. NC_079877.1 Reference HSymV2.1

    Range
    24368066..24380187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057446078.1 → XP_057302061.1  E3 ubiquitin-protein ligase CBL-like

    Related
    XP_057302061.1, XM_057446078.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases