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SPTLC2 serine palmitoyltransferase long chain base subunit 2 [ Malurus melanocephalus (red-backed fairy wren) ]

Gene ID: 130581598, updated on 3-Aug-2024

Summary

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Gene symbol
SPTLC2
Gene description
serine palmitoyltransferase long chain base subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Malurus melanocephalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Meliphagoidea; Maluridae; Malurus
Orthologs
human mouse all
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Genomic context

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See SPTLC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_06 current MMel_1.1 (GCF_030028575.1) Unplaced Scaffold NW_026623232.1 (6399603..6474724, complement)

NW_026623232.1Genomic Context describing neighboring genes Neighboring gene activator of HSP90 ATPase activity 1 Neighboring gene isthmin 2 Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene SNW domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026623232 Unplaced Scaffold Reference MMel_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030028575.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MMel_1.1 Primary Assembly

Genomic

  1. NW_026623232.1 Reference MMel_1.1 Primary Assembly

    Range
    6399603..6474724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057379923.1 → XP_057235906.1  serine palmitoyltransferase 2

  2. XM_057379843.1 → XP_057235826.1  serine palmitoyltransferase 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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