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SDC2 syndecan 2 [ Malurus melanocephalus (red-backed fairy wren) ]

Gene ID: 130573667, updated on 3-Aug-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Malurus melanocephalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Meliphagoidea; Maluridae; Malurus
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_06 current MMel_1.1 (GCF_030028575.1) Unplaced Scaffold NW_026623294.1 (503529..563521)

NW_026623294.1Genomic Context describing neighboring genes Neighboring gene mitochondrial transcription termination factor 3 Neighboring gene phosphatidylserine synthase 1 Neighboring gene carboxypeptidase Q Neighboring gene metadherin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026623294 Unplaced Scaffold Reference MMel_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030028575.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MMel_1.1 Primary Assembly

Genomic

  1. NW_026623294.1 Reference MMel_1.1 Primary Assembly

    Range
    503529..563521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057366244.1 → XP_057222227.1  syndecan-2

Nucleotide Protein
Heading Accession and Version

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