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kptn kaptin (actin binding protein) [ Triplophysa rosa ]

Gene ID: 130571614, updated on 10-Jul-2024

Summary

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Gene symbol
kptn
Gene description
kaptin (actin binding protein)
Locus tag
IRJ41_006475
See related
EnsemblRapid:ENSTRSG00005017905
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
Also known as
kaptin
Orthologs
human zebrafish all
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Genomic context

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See kptn in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
12
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG2 NC_079891.1 (19620560..19628592)

Linkage Group LG2 - NC_079891.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130548166 Neighboring gene cone-rod homeobox Neighboring gene heterogeneous nuclear ribonucleoprotein L Neighboring gene serine and arginine rich splicing factor 7a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079891.1 Chromosome LG2 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of KICSTOR complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein kaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079891.1 Reference Trosa_1v2 Primary Assembly

    Range
    19620560..19628592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057362743.1 → XP_057218726.1  KICSTOR complex protein kaptin

    UniProtKB/TrEMBL
    A0A9W8CA56
    Related
    ENSTRSP00005047793.1, ENSTRST00005049828.1
Nucleotide Protein
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