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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Triplophysa rosa ]

Gene ID: 130570319, updated on 10-Jul-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
Locus tag
IRJ41_013534
See related
EnsemblRapid:ENSTRSG00005008473
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
11
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG19 NC_079908.1 (6442515..6638528, complement)

Linkage Group LG19 - NC_079908.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene zona pellucida sperm-binding protein 3-like Neighboring gene girdin-like Neighboring gene mitochondrial ribosomal protein L22

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079908.1 Chromosome LG19 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079908.1 Reference Trosa_1v2 Primary Assembly

    Range
    6442515..6638528 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057360575.1 → XP_057216558.1  delta-sarcoglycan isoform X3

    Related
    ENSTRSP00005021905.1, ENSTRST00005022520.1

  2. XM_057360574.1 → XP_057216557.1  delta-sarcoglycan isoform X3

  3. XM_057360572.1 → XP_057216555.1  delta-sarcoglycan isoform X1

    Related
    ENSTRSP00005021907.1, ENSTRST00005022522.1

  4. XM_057360573.1 → XP_057216556.1  delta-sarcoglycan isoform X2

    Related
    ENSTRSP00005021906.1, ENSTRST00005022521.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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