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LOC130567618 tight junction protein ZO-2-like [ Triplophysa rosa ]

Gene ID: 130567618, updated on 10-Jul-2024

Summary

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Gene symbol
LOC130567618
Gene description
tight junction protein ZO-2-like
Locus tag
IRJ41_021254
See related
EnsemblRapid:ENSTRSG00005005179
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
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Genomic context

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See LOC130567618 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
30
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG17 NC_079906.1 (19531032..19596320, complement)

Linkage Group LG17 - NC_079906.1Genomic Context describing neighboring genes Neighboring gene formin binding protein 1a Neighboring gene piercer of microtubule wall 1 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase, type I, beta b Neighboring gene frataxin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079906.1 Chromosome LG17 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of endothelial intestinal barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of blood-brain barrier permeability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tight junction protein ZO-2-like
Names
putative tight junction protein ZO-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079906.1 Reference Trosa_1v2 Primary Assembly

    Range
    19531032..19596320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057355850.1 → XP_057211833.1  tight junction protein ZO-2-like isoform X2

  2. XM_057355849.1 → XP_057211832.1  tight junction protein ZO-2-like isoform X1

    Related
    ENSTRSP00005014165.1, ENSTRST00005014735.1

  3. XM_057355853.1 → XP_057211836.1  tight junction protein ZO-2-like isoform X5

  4. XM_057355854.1 → XP_057211837.1  tight junction protein ZO-2-like isoform X6

    Related
    ENSTRSP00005014120.1, ENSTRST00005014690.1

  5. XM_057355856.1 → XP_057211839.1  tight junction protein ZO-2-like isoform X8

    Related
    ENSTRSP00005013925.1, ENSTRST00005014495.1

  6. XM_057355855.1 → XP_057211838.1  tight junction protein ZO-2-like isoform X7

  7. XM_057355851.1 → XP_057211834.1  tight junction protein ZO-2-like isoform X3

  8. XM_057355852.1 → XP_057211835.1  tight junction protein ZO-2-like isoform X4

Nucleotide Protein
Heading Accession and Version

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