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cbl Cbl proto-oncogene, E3 ubiquitin protein ligase [ Triplophysa rosa ]

Gene ID: 130564410, updated on 10-Jul-2024

Summary

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Gene symbol
cbl
Gene description
Cbl proto-oncogene, E3 ubiquitin protein ligase
Locus tag
IRJ41_009559
See related
EnsemblRapid:ENSTRSG00005021939
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
Orthologs
human zebrafish all
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Genomic context

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See cbl in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
16
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG14 NC_079903.1 (13441995..13473259)

Linkage Group LG14 - NC_079903.1Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 12a Neighboring gene glutamate receptor, ionotropic, kainate 4 Neighboring gene dynein regulatory complex subunit 12 homolog Neighboring gene melanoma cell adhesion molecule b Neighboring gene ring finger protein 26

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079903.1 Chromosome LG14 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphotyrosine residue binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of epidermal growth factor-activated receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase CBL
Names
putative E3 ubiquitin-protein ligase CBL

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079903.1 Reference Trosa_1v2 Primary Assembly

    Range
    13441995..13473259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057350476.1 → XP_057206459.1  E3 ubiquitin-protein ligase CBL isoform X2

    Related
    ENSTRSP00005057318.1, ENSTRST00005060739.1

  2. XM_057350475.1 → XP_057206458.1  E3 ubiquitin-protein ligase CBL isoform X1

    UniProtKB/TrEMBL
    A0A9W7WIW2
    Related
    ENSTRSP00005057316.1, ENSTRST00005060737.1

  3. XM_057350477.1 → XP_057206460.1  E3 ubiquitin-protein ligase CBL isoform X3

    Related
    ENSTRSP00005057305.1, ENSTRST00005060726.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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