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plecb plectin b [ Triplophysa rosa ]

Gene ID: 130558647, updated on 10-Jul-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
Locus tag
IRJ41_000053
See related
EnsemblRapid:ENSTRSG00005014993
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
39
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG8 NC_079897.1 (8607862..8805093, complement)

Linkage Group LG8 - NC_079897.1Genomic Context describing neighboring genes Neighboring gene Bardet-Biedl syndrome 9 Neighboring gene E3 SUMO-protein ligase ZBED1-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene uncharacterized LOC130558673 Neighboring gene uncharacterized LOC130558671 Neighboring gene uncharacterized LOC130558653 Neighboring gene MTCL family member 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079897.1 Chromosome LG8 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin
Names
putative plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079897.1 Reference Trosa_1v2 Primary Assembly

    Range
    8607862..8805093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057341180.1 → XP_057197163.1  plectin isoform X5

  2. XM_057341176.1 → XP_057197159.1  plectin isoform X2

  3. XM_057341179.1 → XP_057197162.1  plectin isoform X4

  4. XM_057341174.1 → XP_057197157.1  plectin isoform X1

    Related
    ENSTRSP00005048912.1, ENSTRST00005051082.1

  5. XM_057341175.1 → XP_057197158.1  plectin isoform X1

  6. XM_057341181.1 → XP_057197164.1  plectin isoform X6

    Related
    ENSTRSP00005048703.1, ENSTRST00005050873.1

  7. XM_057341178.1 → XP_057197161.1  plectin isoform X3

    Related
    ENSTRSP00005048531.1, ENSTRST00005050701.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases