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kirrel1b kirre like nephrin family adhesion molecule 1b [ Triplophysa rosa ]

Gene ID: 130555028, updated on 10-Jul-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
Locus tag
IRJ41_007952
See related
EnsemblRapid:ENSTRSG00005006993
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
15
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG5 NC_079894.1 (21074446..21105123, complement)

Linkage Group LG5 - NC_079894.1Genomic Context describing neighboring genes Neighboring gene NOD-like receptor family B, member 5 Neighboring gene tripartite motif-containing protein 10-like Neighboring gene uncharacterized LOC130555058 Neighboring gene cell adhesion molecule 3 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079894.1 Chromosome LG5 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1b
Names
putative kin of IRRE like b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079894.1 Reference Trosa_1v2 Primary Assembly

    Range
    21074446..21105123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057335040.1 → XP_057191023.1  kin of IRRE-like protein 1b isoform X4

  2. XM_057335038.1 → XP_057191021.1  kin of IRRE-like protein 1b isoform X2

    Related
    ENSTRSP00005017954.1, ENSTRST00005018562.1

  3. XM_057335039.1 → XP_057191022.1  kin of IRRE-like protein 1b isoform X3

    Related
    ENSTRSP00005017935.1, ENSTRST00005018543.1

  4. XM_057335037.1 → XP_057191020.1  kin of IRRE-like protein 1b isoform X1

    UniProtKB/TrEMBL
    A0A9W8C7J4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases