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LOC130552214 patatin-like phospholipase domain-containing protein 2 [ Triplophysa rosa ]

Gene ID: 130552214, updated on 18-Sep-2024

Summary

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Gene symbol
LOC130552214
Gene description
patatin-like phospholipase domain-containing protein 2
Locus tag
IRJ41_022290
See related
EnsemblRapid:ENSTRSG00005013727
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
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Genomic context

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See LOC130552214 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
8
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG3 NC_079892.1 (7950617..7953151, complement)

Linkage Group LG3 - NC_079892.1Genomic Context describing neighboring genes Neighboring gene thymine DNA glycosylase, tandem duplicate 2 Neighboring gene thymine DNA glycosylase, tandem duplicate 1 Neighboring gene EF-hand calcium binding domain 6 Neighboring gene SAMM50 sorting and assembly machinery component

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079892.1 Chromosome LG3 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 2
Names
putative patatin-like phospholipase domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079892.1 Reference Trosa_1v2 Primary Assembly

    Range
    7950617..7953151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057330414.1 → XP_057186397.1  patatin-like phospholipase domain-containing protein 2 isoform X1

    Related
    ENSTRSP00005036602.1, ENSTRST00005037725.1

  2. XM_057330415.1 → XP_057186398.1  patatin-like phospholipase domain-containing protein 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases