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kmt2ca lysine (K)-specific methyltransferase 2Ca [ Triplophysa rosa ]

Gene ID: 130551101, updated on 27-Mar-2024

Summary

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Gene symbol
kmt2ca
Gene description
lysine (K)-specific methyltransferase 2Ca
Locus tag
IRJ41_003300
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
Orthologs
human zebrafish all
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Genomic context

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See kmt2ca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
61
Annotation release Status Assembly Chr Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) Unplaced Scaffold NW_026634645.1 (5049..127477, complement)

NW_026634645.1Genomic Context describing neighboring genes Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 2 Neighboring gene actin related protein 3B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026634645 Unplaced Scaffold Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MLL3/4 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2C
Names
putative histone-lysine N-methyltransferase 2C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NW_026634645.1 Reference Trosa_1v2 Primary Assembly

    Range
    5049..127477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057328655.1 → XP_057184638.1  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2C

Nucleotide Protein
Heading Accession and Version

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