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traf2a Tnf receptor-associated factor 2a [ Triplophysa rosa ]

Gene ID: 130546805, updated on 10-Jul-2024

Summary

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Gene symbol
traf2a
Gene description
Tnf receptor-associated factor 2a
Locus tag
IRJ41_002593
See related
EnsemblRapid:ENSTRSG00005018988
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
Orthologs
zebrafish all
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Genomic context

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See traf2a in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
11
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG2 NC_079891.1 (24785703..24795652)

Linkage Group LG2 - NC_079891.1Genomic Context describing neighboring genes Neighboring gene alpha-1-antiproteinase-like Neighboring gene TRAF-type zinc finger domain containing 1 Neighboring gene tenascin Cb Neighboring gene beta-1,3-galactosyltransferase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079891.1 Chromosome LG2 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 2
Names
putative TNF receptor-associated factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079891.1 Reference Trosa_1v2 Primary Assembly

    Range
    24785703..24795652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057322263.1 → XP_057178246.1  TNF receptor-associated factor 2

    UniProtKB/TrEMBL
    A0A9W7X218
    Related
    ENSTRSP00005050812.1, ENSTRST00005053039.1

  2. XM_057322272.1 → XP_057178255.1  TNF receptor-associated factor 2

    UniProtKB/TrEMBL
    A0A9W7X218

  3. XM_057322280.1 → XP_057178263.1  TNF receptor-associated factor 2

    UniProtKB/TrEMBL
    A0A9W7X218
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases