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galnt6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) [ Triplophysa rosa ]

Gene ID: 130545462, updated on 10-Jul-2024

Summary

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Gene symbol
galnt6
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
Locus tag
IRJ41_014828
See related
EnsemblRapid:ENSTRSG00005023577
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
Orthologs
zebrafish all
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Genomic context

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See galnt6 in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
13
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG21 NC_079910.1 (8458790..8470868)

Linkage Group LG21 - NC_079910.1Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, beta 3b Neighboring gene adenylate cyclase 6b Neighboring gene ceramide kinase family protein Neighboring gene heparan sulfate proteoglycan 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079910.1 Chromosome LG21 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079910.1 Reference Trosa_1v2 Primary Assembly

    Range
    8458790..8470868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057319971.1 → XP_057175954.1  polypeptide N-acetylgalactosaminyltransferase 6

    UniProtKB/TrEMBL
    A0A9W7TBD0
    Related
    ENSTRSP00005061244.1, ENSTRST00005065236.1

  2. XM_057319970.1 → XP_057175953.1  polypeptide N-acetylgalactosaminyltransferase 6

    UniProtKB/TrEMBL
    A0A9W7TBD0
    Related
    ENSTRSP00005061251.1, ENSTRST00005065243.1

RNA

  1. XR_008961649.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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