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plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [ Triplophysa rosa ]

Gene ID: 130544911, updated on 10-Jul-2024

Summary

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Gene symbol
plod3
Gene description
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
Locus tag
IRJ41_000436
See related
EnsemblRapid:ENSTRSG00005023078
Gene type
protein coding
RefSeq status
MODEL
Organism
Triplophysa rosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Nemacheilidae; Triplophysa
Orthologs
human zebrafish all
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Genomic context

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See plod3 in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
19
Annotation release Status Assembly LG Location
RS_2023_06 current Trosa_1v2 (GCF_024868665.1) LG21 NC_079910.1 (728904..737903, complement)

Linkage Group LG21 - NC_079910.1Genomic Context describing neighboring genes Neighboring gene glycolipid transfer protein domain containing 2a Neighboring gene alpha-2,8-sialyltransferase 8F-like Neighboring gene FH2 domain-containing protein 1 Neighboring gene asialoglycoprotein receptor 1a Neighboring gene C-type mannose receptor 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079910.1 Chromosome LG21 Reference Trosa_1v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024868665.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Trosa_1v2 Primary Assembly

Genomic

  1. NC_079910.1 Reference Trosa_1v2 Primary Assembly

    Range
    728904..737903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057319078.1 → XP_057175061.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X1

    Related
    ENSTRSP00005060042.1, ENSTRST00005063901.1

  2. XM_057319080.1 → XP_057175063.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X2

    UniProtKB/TrEMBL
    A0A9W7WC67
    Related
    ENSTRSP00005060050.1, ENSTRST00005063909.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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