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capn3b calpain 3b [ Takifugu flavidus (sansaifugu) ]

Gene ID: 130515702, updated on 27-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
Locus tag
D4764_19G0005010
See related
EnsemblRapid:ENSTFLG00005015104
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu flavidus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
Calpain-3
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM371156v2 (GCF_003711565.1) 19 NC_079538.1 (5347251..5355542, complement)

Chromosome 19 - NC_079538.1Genomic Context describing neighboring genes Neighboring gene tau tubulin kinase 2b Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene nuclear receptor binding protein 1 Neighboring gene macoilin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079538.1 Chromosome 19 Reference ASM371156v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_003711565.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM371156v2 Primary Assembly

Genomic

  1. NC_079538.1 Reference ASM371156v2 Primary Assembly

    Range
    5347251..5355542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057016141.1 → XP_056872121.1  calpain-3b isoform X2

  2. XM_057016142.1 → XP_056872122.1  calpain-3b isoform X3

    UniProtKB/TrEMBL
    A0A5C6NNF4
    Related
    ENSTFLP00005030628.1, ENSTFLT00005031890.1

  3. XM_057016140.1 → XP_056872120.1  calpain-3b isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases