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LOC130513626 aspartyl/asparaginyl beta-hydroxylase-like [ Takifugu flavidus (sansaifugu) ]

Gene ID: 130513626, updated on 9-Nov-2023

Summary

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Gene symbol
LOC130513626
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Locus tag
D4764_17G0000890
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu flavidus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
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Genomic context

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See LOC130513626 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM371156v2 (GCF_003711565.1) 17 NC_079536.1 (968133..982058, complement)

Chromosome 17 - NC_079536.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130513634 Neighboring gene serine/threonine-protein kinase RIO3-like Neighboring gene clavesin-1-like Neighboring gene uncharacterized LOC130513631 Neighboring gene sodium channel protein type 4 subunit alpha-like Neighboring gene ribonuclease inhibitor-like Neighboring gene uncharacterized LOC130513636

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079536.1 Chromosome 17 Reference ASM371156v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like
Names
Aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_003711565.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM371156v2 Primary Assembly

Genomic

  1. NC_079536.1 Reference ASM371156v2 Primary Assembly

    Range
    968133..982058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057012453.1 → XP_056868433.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X5

  2. XM_057012452.1 → XP_056868432.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

  3. XM_057012450.1 → XP_056868430.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

  4. XM_057012449.1 → XP_056868429.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

  5. XM_057012451.1 → XP_056868431.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

  6. XM_057012454.1 → XP_056868434.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X6

Nucleotide Protein
Heading Accession and Version

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