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LOC130504012 probable galacturonosyltransferase 3 [ Raphanus sativus (radish) ]

Gene ID: 130504012, updated on 20-Nov-2023

Summary

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Gene symbol
LOC130504012
Gene description
probable galacturonosyltransferase 3
Locus tag
Rs2_48525
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC130504012 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) Unplaced Scaffold NW_026616611.1 (20789..23343)

NW_026616611.1Genomic Context describing neighboring genes Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase Neighboring gene amino acid transporter AVT3C Neighboring gene uncharacterized LOC108854242

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026616611 Unplaced Scaffold Reference ASM80110v3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 3
Names
putative galacturonosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NW_026616611.1 Reference ASM80110v3 Primary Assembly

    Range
    20789..23343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056998587.1 → XP_056854567.1  probable galacturonosyltransferase 3

    UniProtKB/TrEMBL
    A0A9W3CSH6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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