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LOC130499118 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [ Raphanus sativus (radish) ]

Gene ID: 130499118, updated on 9-Nov-2023

Summary

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Gene symbol
LOC130499118
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
Locus tag
Rs2_35965
Gene type
protein coding
RefSeq status
MODEL
Organism
Raphanus sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Genomic context

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See LOC130499118 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM80110v3 (GCF_000801105.2) 8 NC_079518.1 (775105..778653)

Chromosome 8 - NC_079518.1Genomic Context describing neighboring genes Neighboring gene protein AGENET DOMAIN (AGD)-CONTAINING P1-like Neighboring gene delta-9 desaturase-like 5 protein Neighboring gene ATP-dependent zinc metalloprotease FTSH 8, chloroplastic-like Neighboring gene uncharacterized LOC130498572

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079518.1 Chromosome 8 Reference ASM80110v3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000801105.2-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM80110v3 Primary Assembly

Genomic

  1. NC_079518.1 Reference ASM80110v3 Primary Assembly

    Range
    775105..778653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056993023.1 → XP_056849003.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

    UniProtKB/TrEMBL
    A0A6J0KN96
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases