U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SMPD1 sphingomyelin phosphodiesterase 1 [ Oenanthe melanoleuca ]

Gene ID: 130255051, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
SMPD1
Gene description
sphingomyelin phosphodiesterase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oenanthe melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Oenanthe
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SMPD1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_05 current OMel1.0 (GCF_029582105.1) 1 NC_079333.1 (111768554..111773042)

Chromosome 1 - NC_079333.1Genomic Context describing neighboring genes Neighboring gene FHF complex subunit HOOK interacting protein 1B Neighboring gene cholecystokinin B receptor Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene tripartite motif containing 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_079333.1 Chromosome 1 Reference OMel1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029582105.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OMel1.0

Genomic

  1. NC_079333.1 Reference OMel1.0

    Range
    111768554..111773042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056495320.1 → XP_056351295.1  sphingomyelin phosphodiesterase

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.