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GPC3 glypican 3 [ Oenanthe melanoleuca ]

Gene ID: 130253022, updated on 3-Aug-2024

Summary

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Gene symbol
GPC3
Gene description
glypican 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Oenanthe melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Oenanthe
Orthologs
human mouse all
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Genomic context

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See GPC3 in Genome Data Viewer
Location:
chromosome: 4A
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_05 current OMel1.0 (GCF_029582105.1) 4A NC_079338.1 (12924801..13070659, complement)

Chromosome 4A - NC_079338.1Genomic Context describing neighboring genes Neighboring gene heparan sulfate 6-O-sulfotransferase 2 Neighboring gene glypican 4 Neighboring gene basic proline-rich protein-like Neighboring gene PHD finger protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079338.1 Chromosome 4A Reference OMel1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029582105.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OMel1.0

Genomic

  1. NC_079338.1 Reference OMel1.0

    Range
    12924801..13070659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056491238.1 → XP_056347213.1  glypican-3 isoform X1

  2. XM_056491240.1 → XP_056347215.1  glypican-3 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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