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LOC130206609 aspartyl/asparaginyl beta-hydroxylase-like [ Pseudoliparis swirei ]

Gene ID: 130206609, updated on 9-Nov-2023

Summary

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Gene symbol
LOC130206609
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudoliparis swirei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Liparidae; Pseudoliparis
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Genomic context

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See LOC130206609 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_05 current NWPU_hadal_v1 (GCF_029220125.1) 16 NC_079403.1 (1743848..1793969, complement)

Chromosome 16 - NC_079403.1Genomic Context describing neighboring genes Neighboring gene clavesin-1-like Neighboring gene aspartyl/asparaginyl beta-hydroxylase-like Neighboring gene uncharacterized abhydrolase domain-containing protein DDB_G0269086-like Neighboring gene sodium channel protein type 4 subunit alpha-like Neighboring gene uncharacterized LOC130206582 Neighboring gene signal sequence receptor, alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079403.1 Chromosome 16 Reference NWPU_hadal_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029220125.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NWPU_hadal_v1 Primary Assembly

Genomic

  1. NC_079403.1 Reference NWPU_hadal_v1 Primary Assembly

    Range
    1743848..1793969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056434654.1 → XP_056290629.1  aspartyl/asparaginyl beta-hydroxylase-like

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases