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sgca sarcoglycan, alpha [ Pseudoliparis swirei ]

Gene ID: 130203253, updated on 29-May-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
EnsemblRapid:ENSRIWG00000003344
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudoliparis swirei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Liparidae; Pseudoliparis
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_05 current NWPU_hadal_v1 (GCF_029220125.1) 13 NC_079400.1 (9199178..9208291)

Chromosome 13 - NC_079400.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase PRDM9-like Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene neurabin-2-like Neighboring gene collagen, type I, alpha 1b Neighboring gene inactive all-trans-retinol 13,14-reductase Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079400.1 Chromosome 13 Reference NWPU_hadal_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029220125.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NWPU_hadal_v1 Primary Assembly

Genomic

  1. NC_079400.1 Reference NWPU_hadal_v1 Primary Assembly

    Range
    9199178..9208291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056429235.1 → XP_056285210.1  alpha-sarcoglycan

    Related
    ENSRIWP00000007135.1, ENSRIWT00000007687.1
Nucleotide Protein
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