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capn3b calpain 3b [ Pseudoliparis swirei ]

Gene ID: 130202117, updated on 29-May-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
EnsemblRapid:ENSRIWG00000001729
Gene type
protein coding
RefSeq status
MODEL
Organism
Pseudoliparis swirei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Cottales; Liparidae; Pseudoliparis
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_05 current NWPU_hadal_v1 (GCF_029220125.1) 12 NC_079399.1 (12198223..12211161, complement)

Chromosome 12 - NC_079399.1Genomic Context describing neighboring genes Neighboring gene mitotic deacetylase associated SANT domain protein a Neighboring gene tau tubulin kinase 2b Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene nuclear receptor binding protein 1 Neighboring gene macoilin-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079399.1 Chromosome 12 Reference NWPU_hadal_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029220125.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NWPU_hadal_v1 Primary Assembly

Genomic

  1. NC_079399.1 Reference NWPU_hadal_v1 Primary Assembly

    Range
    12198223..12211161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056427379.1 → XP_056283354.1  calpain-3b isoform X2

  2. XM_056427378.1 → XP_056283353.1  calpain-3b isoform X1

    Related
    ENSRIWP00000005926.1, ENSRIWT00000006441.1

  3. XM_056427380.1 → XP_056283355.1  calpain-3b isoform X3

    Related
    ENSRIWP00000005927.1, ENSRIWT00000006442.1

  4. XM_056427381.1 → XP_056283356.1  calpain-3b isoform X4

  5. XM_056427383.1 → XP_056283358.1  calpain-3b isoform X5

  6. XM_056427382.1 → XP_056283357.1  calpain-3b isoform X5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases