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si:dkey-219c10.4 high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A [ Rhinichthys klamathensis goyatoka ]

Gene ID: 130096642, updated on 27-Mar-2024

Summary

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Gene symbol
si:dkey-219c10.4
Gene description
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinichthys klamathensis goyatoka (sub-species: goyatoka)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Rhinichthys; Rhinichthys klamathensis
Orthologs
zebrafish all
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Genomic context

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See si:dkey-219c10.4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_05 current OSU_Roscu_1.1 (GCF_029890125.1) Unplaced Scaffold NW_026606727.1 (558379..567323, complement)

NW_026606727.1Genomic Context describing neighboring genes Neighboring gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 Neighboring gene calcium channel, voltage-dependent, beta 4a subunit Neighboring gene small nucleolar RNA ACA64 Neighboring gene small nucleolar RNA ACA64 Neighboring gene nucleolar protein interacting with the FHA domain of MKI67

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026606727 Unplaced Scaffold Reference OSU_Roscu_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029890125.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OSU_Roscu_1.1

Genomic

  1. NW_026606727.1 Reference OSU_Roscu_1.1

    Range
    558379..567323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056263232.1 → XP_056119207.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

Nucleotide Protein
Heading Accession and Version

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