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plecb plectin b [ Rhinichthys klamathensis goyatoka ]

Gene ID: 130090576, updated on 27-Mar-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinichthys klamathensis goyatoka (sub-species: goyatoka)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Rhinichthys; Rhinichthys klamathensis
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
RS_2023_05 current OSU_Roscu_1.1 (GCF_029890125.1) Unplaced Scaffold NW_026606559.1 (8329972..8506868, complement)

NW_026606559.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 52 member 3-2b Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene enoyl CoA hydratase domain containing 1 Neighboring gene protein SOGA3 Neighboring gene MTCL family member 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026606559 Unplaced Scaffold Reference OSU_Roscu_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029890125.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OSU_Roscu_1.1

Genomic

  1. NW_026606559.1 Reference OSU_Roscu_1.1

    Range
    8329972..8506868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056258050.1 → XP_056114025.1  plectin isoform X5

  2. XM_056258071.1 → XP_056114046.1  plectin isoform X8

  3. XM_056258041.1 → XP_056114016.1  plectin isoform X4

  4. XM_056258033.1 → XP_056114008.1  plectin isoform X3

  5. XM_056258017.1 → XP_056113992.1  plectin isoform X1

  6. XM_056258025.1 → XP_056114000.1  plectin isoform X2

  7. XM_056258062.1 → XP_056114037.1  plectin isoform X7

  8. XM_056258055.1 → XP_056114030.1  plectin isoform X6

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases