U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

capn3a calpain 3a, (p94) [ Rhinichthys klamathensis goyatoka ]

Gene ID: 130080204, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinichthys klamathensis goyatoka (sub-species: goyatoka)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Rhinichthys; Rhinichthys klamathensis
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See capn3a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_05 current OSU_Roscu_1.1 (GCF_029890125.1) Unplaced Scaffold NW_026606581.1 (875312..894499)

NW_026606581.1Genomic Context describing neighboring genes Neighboring gene transmembrane p24 trafficking protein 8 Neighboring gene tau tubulin kinase 2a Neighboring gene glucosidase, alpha; neutral C Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_026606581 Unplaced Scaffold Reference OSU_Roscu_1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029890125.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OSU_Roscu_1.1

Genomic

  1. NW_026606581.1 Reference OSU_Roscu_1.1

    Range
    875312..894499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056245509.1 → XP_056101484.1  calpain-3 isoform X1

  2. XM_056245510.1 → XP_056101485.1  calpain-3 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases