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LOC130046322 toll-like receptor 2 type-2 [ Ostrea edulis ]

Gene ID: 130046322, updated on 16-Nov-2023

Summary

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Gene symbol
LOC130046322
Gene description
toll-like receptor 2 type-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Ostrea edulis
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Ostrea
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Genomic context

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See LOC130046322 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_05 current xbOstEdul1.1 (GCF_947568905.1) 7 NC_079170.1 (1898796..1901597, complement)

Chromosome 7 - NC_079170.1Genomic Context describing neighboring genes Neighboring gene toll-like receptor 6 Neighboring gene toll-like receptor 6 Neighboring gene potential E3 ubiquitin-protein ligase ariadne-2-like Neighboring gene uncharacterized LOC130047632 Neighboring gene inter-alpha-trypsin inhibitor heavy chain H3-like Neighboring gene uncharacterized LOC125654267

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_079170.1 Chromosome 7 Reference xbOstEdul1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2 type-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_947568905.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference xbOstEdul1.1

Genomic

  1. NC_079170.1 Reference xbOstEdul1.1

    Range
    1898796..1901597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_056143008.1 → XP_055998983.1  toll-like receptor 2 type-2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases