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wash1 WAS protein family homolog 1 [ Salvelinus fontinalis (brook trout) ]

Gene ID: 129862246, updated on 29-May-2024

Summary

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Gene symbol
wash1
Gene description
WAS protein family homolog 1
See related
EnsemblRapid:ENSFAAG00000015659
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus fontinalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
human zebrafish all
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Genomic context

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See wash1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2944872v1 (GCF_029448725.1) 9 NC_074673.1 (20838233..20844800, complement)

Chromosome 9 - NC_074673.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 3b Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP4-like Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 Neighboring gene uncharacterized LOC129862251 Neighboring gene IQ motif and SEC7 domain-containing protein 3-like Neighboring gene phosphatidylinositol phosphatase PTPRQ-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_074673.1 Chromosome 9 Reference ASM2944872v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables gamma-tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endocytic recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029448725.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2944872v1

Genomic

  1. NC_074673.1 Reference ASM2944872v1

    Range
    20838233..20844800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055933720.1 → XP_055789695.1  WASH complex subunit 1 isoform X1

    Related
    ENSFAAP00000033765.1, ENSFAAT00000039755.1

  2. XM_055933721.1 → XP_055789696.1  WASH complex subunit 1 isoform X2

    Related
    ENSFAAP00000033751.1, ENSFAAT00000039741.1
Nucleotide Protein
Heading Accession and Version

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