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cacna1da calcium channel, voltage-dependent, L type, alpha 1D subunit, a [ Salvelinus fontinalis (brook trout) ]

Gene ID: 129815886, updated on 29-May-2024

Summary

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Gene symbol
cacna1da
Gene description
calcium channel, voltage-dependent, L type, alpha 1D subunit, a
See related
EnsemblRapid:ENSFAAG00000044593
Gene type
protein coding
RefSeq status
MODEL
Organism
Salvelinus fontinalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salvelinus
Orthologs
zebrafish all
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Genomic context

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See cacna1da in Genome Data Viewer
Location:
chromosome: 18
Exon count:
50
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2944872v1 (GCF_029448725.1) 18 NC_074682.1 (27432413..27560160)

Chromosome 18 - NC_074682.1Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain-containing protein 20-like Neighboring gene zinc finger and SCAN domain-containing protein 2-like Neighboring gene transketolase-like Neighboring gene parapinopsin-like Neighboring gene voltage-dependent calcium channel subunit alpha-2/delta-3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_074682.1 Chromosome 18 Reference ASM2944872v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium channel, voltage-dependent, L type, alpha 1D subunit, a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029448725.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2944872v1

Genomic

  1. NC_074682.1 Reference ASM2944872v1

    Range
    27432413..27560160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055870041.1 → XP_055726016.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X1

  2. XM_055870042.1 → XP_055726017.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X2

  3. XM_055870043.1 → XP_055726018.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X3

  4. XM_055870044.1 → XP_055726019.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X4

  5. XM_055870054.1 → XP_055726029.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X12

    Related
    ENSFAAP00000114881.1, ENSFAAT00000131017.1

  6. XM_055870045.1 → XP_055726020.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X5

  7. XM_055870046.1 → XP_055726021.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X6

  8. XM_055870048.1 → XP_055726023.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X7

  9. XM_055870060.1 → XP_055726035.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X17

  10. XM_055870050.1 → XP_055726025.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X9

    Related
    ENSFAAP00000114082.1, ENSFAAT00000130137.1

  11. XM_055870051.1 → XP_055726026.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X10

  12. XM_055870052.1 → XP_055726027.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X11

  13. XM_055870049.1 → XP_055726024.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X8

  14. XM_055870057.1 → XP_055726032.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X15

    Related
    ENSFAAP00000114925.1, ENSFAAT00000131063.1

  15. XM_055870055.1 → XP_055726030.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X13

    Related
    ENSFAAP00000114814.1, ENSFAAT00000130951.1

  16. XM_055870056.1 → XP_055726031.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X14

    Related
    ENSFAAP00000114866.1, ENSFAAT00000131003.1

  17. XM_055870058.1 → XP_055726033.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X16

Nucleotide Protein
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