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b4galnt1b beta-1,4-N-acetyl-galactosaminyl transferase 1b [ Leucoraja erinaceus (little skate) ]

Gene ID: 129714721, updated on 12-Oct-2024

Summary

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Gene symbol
b4galnt1b
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 1b
See related
EnsemblRapid:ENSLERG00010011207
Gene type
protein coding
RefSeq status
MODEL
Organism
Leucoraja erinaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
Orthologs
human zebrafish all
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Genomic context

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See b4galnt1b in Genome Data Viewer
Location:
chromosome: 40
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) 40 NC_073416.1 (2804053..2840707)

Chromosome 40 - NC_073416.1Genomic Context describing neighboring genes Neighboring gene tachykinin-3-like Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene beta-1,4 N-acetylgalactosaminyltransferase 1-like Neighboring gene solute carrier family 26 member 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073416.1 Chromosome 40 Reference Leri_hhj_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Leri_hhj_1 Primary Assembly

Genomic

  1. NC_073416.1 Reference Leri_hhj_1 Primary Assembly

    Range
    2804053..2840707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055664496.1 → XP_055520471.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X1

    Related
    ENSLERP00010018342.1, ENSLERT00010027829.1

  2. XM_055664497.1 → XP_055520472.1  beta-1,4 N-acetylgalactosaminyltransferase 1 isoform X2

    Related
    ENSLERP00010018346.1, ENSLERT00010027833.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases