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acp5a acid phosphatase 5a, tartrate resistant [ Leucoraja erinaceus (little skate) ]

Gene ID: 129714390, updated on 12-Oct-2024

Summary

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Gene symbol
acp5a
Gene description
acid phosphatase 5a, tartrate resistant
See related
EnsemblRapid:ENSLERG00010012643
Gene type
protein coding
RefSeq status
MODEL
Organism
Leucoraja erinaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
Orthologs
human zebrafish all
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Genomic context

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See acp5a in Genome Data Viewer
Location:
chromosome: 39
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) 39 NC_073415.1 (9818490..9827188)

Chromosome 39 - NC_073415.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129714568 Neighboring gene outer dynein arm docking complex subunit 3 Neighboring gene elongation factor 1 Neighboring gene calponin 1, basic, smooth muscle, b Neighboring gene TLC domain containing 4b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073415.1 Chromosome 39 Reference Leri_hhj_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferric iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferrous iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bone resorption IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tartrate-resistant acid phosphatase type 5a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Leri_hhj_1 Primary Assembly

Genomic

  1. NC_073415.1 Reference Leri_hhj_1 Primary Assembly

    Range
    9818490..9827188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055663957.1 → XP_055519932.1  tartrate-resistant acid phosphatase type 5a isoform X1

  2. XM_055663959.1 → XP_055519934.1  tartrate-resistant acid phosphatase type 5a isoform X2

  3. XM_055663956.1 → XP_055519931.1  tartrate-resistant acid phosphatase type 5a isoform X1

    Related
    ENSLERP00010021201.1, ENSLERT00010031747.1

  4. XM_055663958.1 → XP_055519933.1  tartrate-resistant acid phosphatase type 5a isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases