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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Leucoraja erinaceus (little skate) ]

Gene ID: 129706222, updated on 12-Oct-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
See related
EnsemblRapid:ENSLERG00010031551
Gene type
protein coding
RefSeq status
MODEL
Organism
Leucoraja erinaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Leucoraja
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_04 current Leri_hhj_1 (GCF_028641065.1) 19 NC_073395.1 (12422948..12541943, complement)

Chromosome 19 - NC_073395.1Genomic Context describing neighboring genes Neighboring gene patatin-like phospholipase domain containing 8 Neighboring gene arginine vasopressin receptor 2b, tandem duplicate, 1 Neighboring gene importin-8-like Neighboring gene caprin family member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_073395.1 Chromosome 19 Reference Leri_hhj_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028641065.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Leri_hhj_1 Primary Assembly

Genomic

  1. NC_073395.1 Reference Leri_hhj_1 Primary Assembly

    Range
    12422948..12541943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055650320.1 → XP_055506295.1  protein O-mannosyl-transferase TMTC1 isoform X3

  2. XM_055650319.1 → XP_055506294.1  protein O-mannosyl-transferase TMTC1 isoform X2

    Related
    ENSLERP00010058616.1, ENSLERT00010085051.1

  3. XM_055650317.1 → XP_055506292.1  protein O-mannosyl-transferase TMTC1 isoform X1

    Related
    ENSLERP00010058618.1, ENSLERT00010085059.1
Nucleotide Protein
Heading Accession and Version

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